AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Recompile Figure S4 for V22 #1538

Closed sjspielman closed 2 years ago

sjspielman commented 2 years ago

Closes #1499

This PR compiles S4 for V22. To support a final figure size <= 8.5x11, I changed some ggplot2 theme settings in the relevant mutational signatures notebook (axis text sizing, etc.) to reduce the figure panel size by code instead of manually. I re-ran this full notebook, and copied figure panels into figures/ after doing the re-sizing. I also added a useDingbats=FALSE for the jitter plot which is needed to properly render the stat_manual() pointrange geom (without this argument, they are all literally Greek letter lambdas instead of points).