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AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Incomplete metadata for RNA-seq biospecimens #156

Closed jashapiro closed 5 years ago

jashapiro commented 5 years ago

File(s)

pbta-histologies.tsv

Release

v5

Link to OpenPBTA-manuscript

N/A

Question/issue

RNA-seq samples are missing data in the tumor_descriptor column. This information can be gleaned by looking at matched WGS samples, but it would be ideal to have this in the row for each of the RNA-seq samples as well.

For example, WGS sample BS_K07KNTFY has the descriptor Initial CNS Tumor, but the matched RNA-seq sample BS_QWNBZ9RJ (both have sample_id 7316-272) has no descriptor.

Ideally, this could be fixed for v6 (#146)

jharenza commented 5 years ago

@jashapiro we can add that!

jharenza commented 5 years ago

Done, will be integrated with #146