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AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Revision: tumor purity threshold after sample removal #1630

Closed sjspielman closed 1 year ago

sjspielman commented 1 year ago

From this comment: https://github.com/AlexsLemonade/OpenPBTA-analysis/pull/1622#issuecomment-1346897771

Once #1629 is completed, we'll want to update the tumor purity threshold exploration to account for removed samples.

sjspielman commented 1 year ago

This was effectively taken care of in #1622, such that thresholds are now explored in this notebook: https://github.com/AlexsLemonade/OpenPBTA-analysis/blob/60791aac1eaa252137eaa1ddbe57bb4a7a1c51b1/analyses/tumor-purity-exploration/02_explore-tumor-purity-thresholds.Rmd