AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
Other
99 stars 67 forks source link

First set of zenodo CSVs #1705

Closed sjspielman closed 1 year ago

sjspielman commented 1 year ago

This PR gets the ball rolling with CSV files towards #1692 by doing a first round of each "paradigm" of table making: a) copying from an analysis module (interaction plots), b) directly made in figures/scripts/. (fig1b barplot).

my plan is to stack PRs from here, after we're definitely on board with the approaches I've taken here! 🎢

sjspielman commented 1 year ago

@jashapiro one more update. I realized the problems (which I still have some of..) with paths are b/c of differences when running from run-tables.sh calling it directly. I've found a maybe middle ground here by just assuming it's being run from tables/. I'm re-requesting review since this was a Choice.