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AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Zenodo CSVs: Figure 3 and Figure S4 #1706

Closed sjspielman closed 1 year ago

sjspielman commented 1 year ago

Towards #1692. ⚠️ Stacked on #1705

This PR adds remaining CSVs for figure 3 (that were not part of #1705) and all CSVs for figure S4, which is linked to figure 3. I did have to make one slight change in the data itself for exporting some panels - we have long names that got wrapped with \n to fit inside facet labels. This is not great for CSVs - the \n ends up getting written as a newline, not string "\n"! So as part of export code, I replace \n -> (space) where necessary.

sjspielman commented 1 year ago

Note one file path is wrong, hence Draft, and once fixed, I will de-draft!