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AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Upload CSVs to Zenodo #1727

Closed sjspielman closed 1 year ago

sjspielman commented 1 year ago

This issue is broken out of #1692. Once all CSVs are set, time to send it to Zenodo and get a DOI!

sjspielman commented 1 year ago

Noting that a zip compression of zenodo-upload/ is ~898 MB.

The....vast majority of that is from the PBTA VAF file which itself is ~893 MB!

jaclyn-taroni commented 1 year ago

Before I go ahead and upload to Zenodo, @sjspielman will do a final quality check first thing tomorrow. @sjspielman, you can find openpbta-manuscript-figure-data.zip in the shared CCDL drive in the OpenPBTA folder.

I created it with the following command from the tables/zenodo-upload directory:

zip -r openpbta-manuscript-figure-data.zip . -x '.*'

This should prevent the .DS_Store files and .gitignore from being included. (I thought including .gitignore in the Zenodo upload would be more confusing than helpful).

Please confirm that you are able to unzip properly and that there are no hidden files. I checked locally with zipinfo but might as well double-check while you're at it!

sjspielman commented 1 year ago

Please confirm that you are able to unzip properly and that there are no hidden files.

Confirmed! However, the README is not the most recent version, so that file needs to be replaced.

jaclyn-taroni commented 1 year ago

Thanks, @sjspielman. I've remedied that and used the same command to generate a new zip file. I am in the middle of the Zenodo upload right now!

jaclyn-taroni commented 1 year ago

✅ DOI: 10.5281/zenodo.7805408