AlexsLemonade / OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Adhere to figure guidelines #1741

Closed sjspielman closed 1 year ago

sjspielman commented 1 year ago

While tackling final figures for publication, bear these requirements in mind from https://www.cell.com/figureguidelines

sjspielman commented 1 year ago

The default/available font for sans family in our image is Helvetica, and using Arial would probably require additional dependencies. I'm therefore going to just stick with the default, since at least it's sans serif!

 > names(pdfFonts())
 [1] "serif"                "sans"                 "mono"                
 [4] "AvantGarde"           "Bookman"              "Courier"             
 [7] "Helvetica"            "Helvetica-Narrow"     "NewCenturySchoolbook"
[10] "Palatino"             "Times"                "URWGothic"           
[13] "URWBookman"           "NimbusMon"            "NimbusSan"           
[16] "URWHelvetica"         "NimbusSanCond"        "CenturySch"          
[19] "URWPalladio"          "NimbusRom"            "URWTimes"            
[22] "ArialMT"              "Japan1"               "Japan1HeiMin"        
[25] "Japan1GothicBBB"      "Japan1Ryumin"         "Korea1"              
[28] "Korea1deb"            "CNS1"                 "GB1"   

> quartzFonts()
$serif
[1] "Times-Roman"      "Times-Bold"       "Times-Italic"     "Times-BoldItalic"

$sans
[1] "Helvetica"             "Helvetica-Bold"        "Helvetica-Oblique"    
[4] "Helvetica-BoldOblique"

$mono
[1] "Courier"             "Courier-Bold"        "Courier-Oblique"    
[4] "Courier-BoldOblique"
sjspielman commented 1 year ago

Resolutions are all at the expected level, and all figure PDFs are well under 20 MB. We're still working to wrap up Figure 5 but all of these aspects have been implemented there as well, so this issue can be closed.