Closed sjspielman closed 1 week ago
- I wanted to find somewhere else in docs to incorporate the insight that you should use arguments for specifying input data paths, to make modules flexible enough to run with test data. I wasn't sure where exactly to put that? It could go into
notebook-structure.md
orscript-structure.md
, or somewhere else?
If people use relative input paths and files in data/current/
this should generally be taken care of automatically. I don't know if we have specific instructions to use that path, but that is what I would emphasize. There should not generally be variable changes needed for running tests (though there will always be some things that get broken by not having expected results)
Sigh, I keep merging in main
. Fixed. But sigh. https://github.com/AlexsLemonade/OpenScPCA-analysis/pull/528/commits/c6252a34c4d34397b621d7384a3bcf54ae6a8f26.
Closes #517
This PR adds documentation for module GHAs. For the first round of review here, please let me know high-level organizational and content comments, and then we can get finer-grained from there!
A couple things to note:
STUB_LINK
s here for forthcoming docsnotebook-structure.md
orscript-structure.md
, or somewhere else?