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AlexsLemonade / OpenScPCA-analysis

An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
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Test fix for docker actions failing after miniforge #744

Closed jashapiro closed 3 weeks ago

jashapiro commented 3 weeks ago

Looking at the changes made in #740, I think the most likely culprit for the failures in #743 is that I had removed adding conda.sh to /etc/profile.d. It seems possible (likely) that GHA isn't activating .bashrc when running its jobs, but hope it is the fix. I am just including the cell-type-ewings module for now. If this works after testing, I will add the same changes to all docker files and instructions.

jaclyn-taroni commented 3 weeks ago

@jashapiro - the analysis module is what is failing?

jashapiro commented 3 weeks ago

@jashapiro - the analysis module is what is failing?

The analysis module failed because it is still pulling the old Docker image, yes.