In benchmarking we have thus far looked at the number of genes detected/cell and the correlation of mean gene expression between alevin-fry and cellranger, but we should do a quick check on the genes that are missing between alevin-fry and cellranger. In this check, we should look to see if the genes lost are mostly low expressed genes or not and if they belong to specific pathways that we may be particularly relevant to pediatric cancer.
In benchmarking we have thus far looked at the number of genes detected/cell and the correlation of mean gene expression between alevin-fry and cellranger, but we should do a quick check on the genes that are missing between alevin-fry and cellranger. In this check, we should look to see if the genes lost are mostly low expressed genes or not and if they belong to specific pathways that we may be particularly relevant to pediatric cancer.