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AlexsLemonade / alsf-scpca

Management and analysis tools for ALSF Single-cell Pediatric Cancer Atlas data.
BSD 3-Clause "New" or "Revised" License
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Explore how Seurat handles AltExp data #129

Open jaclyn-taroni opened 3 years ago

jaclyn-taroni commented 3 years ago

I'm actually not sure how seurat handles AltExp, so we may want docs on that front as well.

Originally posted by @jashapiro in https://github.com/AlexsLemonade/alsf-scpca/issues/122#issuecomment-909380992

We're planning on having SingleCellExperiments with AltExp data saved in RDS that are distributed to users. Some users are likely to want to use the seurat package for analysis. We should explore what happens and if it's worth writing an FAQ, we will fill an issue on scpca-docs