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AlexsLemonade / alsf-scpca

Management and analysis tools for ALSF Single-cell Pediatric Cancer Atlas data.
BSD 3-Clause "New" or "Revised" License
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Add kallisto indexing #7

Closed jashapiro closed 4 years ago

jashapiro commented 4 years ago

This PR adds a nextflow process for indexing the same transcript files as salmon with kallisto. It may ask for more memory than is strictly needed, but it does need more than the minimum/batch default.