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AlexsLemonade / compendium-processing

A series of analyses related to refine.bio species compendia
BSD 3-Clause "New" or "Revised" License
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Selecting SCAN-processed and lengthScaledTPM data for download #2

Closed jaclyn-taroni closed 6 years ago

jaclyn-taroni commented 6 years ago

To do some experimentation re: how to process species compendia, it was necessary to obtain "unsmashed" zebrafish microarray data and RNA-seq data. I did this by identifying the s3 links via the API which I queried with R.

jaclyn-taroni commented 6 years ago

Thanks @cansav09. I've handled the case above a bit more gracefully now. The same files would be retrieved even with this change.