search

AlexsLemonade / identifier-refinery

Tools and assets for easy gene identifier conversion
https://github.com/AlexsLemonade/identifier-refinery
Other
2 stars 1 forks source link

Conversion mapping for ST Arrays have missing values #5

Closed jaclyn-taroni closed 6 years ago

jaclyn-taroni commented 6 years ago

Example from ragene10st:

PROBEID ENSEMBL SYMBOL ENTREZID UNIGENE REFSEQ
10918791 ENSRNOG00000005970 NA NA NA NA
10805165 ENSRNOG00000051965 NA NA NA NA
10828440 ENSRNOG00000000471 NA NA NA NA
10889331 ENSRNOG00000059402 NA NA NA NA
10705511 ENSRNOG00000019578 NA NA NA NA
10815536 ENSRNOG00000013393 NA NA NA NA
10866370 ENSRNOG00000033896 NA NA NA NA
10830088 ENSRNOG00000030109 NA NA NA NA

Also seen in human, mouse. One note: instead of using the probeset.db, we may want to move to the transcriptcluster.db package from bioconductor.

jaclyn-taroni commented 6 years ago

Those PROBEIDs look suspect.