Part 2: Add the rownames.print = FALSE and re-render

[cansavvy]

Purpose

Some of the printed tables have row names printed out even when its not helpful.

This is the second PR of 2 that involves me going through each notebook: 1) Searching for head 2) Looking at that table in the html 3) Adding rownames.print = FALSE if the row names are not helpful there.

In this PR I evaluated all the RNA-seq notebooks except pathway analyses and also the only current advanced-topics notebook we have: wgcna.

The pathway-analysis notebooks @jaclyn-taroni is addressing in this respect as she is going through them for polishing.

Issue addressed

This #428

Remaining concerns and questions

If a notebook has no changes, but was included in the list of the notebooks I looked at, that means I concluded that the row names were helpful or at lease not confusing to include.

Html previews of the changed notebooks:

• http://htmlpreview.github.io/?https://github.com/AlexsLemonade/refinebio-examples/blob/cansavvy/remove-rownames-part2/03-rnaseq/differential-expression_rnaseq_01.html
• http://htmlpreview.github.io/?https://github.com/AlexsLemonade/refinebio-examples/blob/cansavvy/remove-rownames-part2/03-rnaseq/gene-id-annotation_rnaseq_01_ensembl.html
• http://htmlpreview.github.io/?https://github.com/AlexsLemonade/refinebio-examples/blob/cansavvy/remove-rownames-part2/03-rnaseq/ortholog-mapping_rnaseq_01_ensembl.html
• http://htmlpreview.github.io/?https://github.com/AlexsLemonade/refinebio-examples/blob/cansavvy/remove-rownames-part2/04-advanced-topics/network-analysis_rnaseq_01_wgcna.html

[cansavvy]

This is a reminder that these renderings mysteriously aren't listening to the line width, so ignore those changes, but the htmls that make it into gh-pages-stages should be fine since github pages will re-render.