For the microarray GSVA example, the following are being addressed:
Enforcing comment character length limit (#406)
Stopping row names from being printed for paged tables (#428)
Adding the introductory paragraphs that are in every pathway analysis notebook (#371)
Comments/questions for the reviewer
Outside of copying over some of the changes to the microarray differential expression example with more than 2 groups (#427), I have not done much with the limma section.
Purpose
Polishing the microarray GSVA example.
Issue addressed
For the microarray GSVA example, the following are being addressed:
Comments/questions for the reviewer
Outside of copying over some of the changes to the microarray differential expression example with more than 2 groups (#427), I have not done much with the
limma
section.