Shorten comments to 80 characters or less per line (#406)
Add intro paragraph & give it a once over #371
Closes #371 and #349. Since this is the last polishing PR to my knowledge, this also closes #406.
Remaining concerns and questions
I believe the DESeqDataSet and VST steps are up to date with the thinking in other polished notebooks, but I'm not sure I'm in the best position to comment on that.
Purpose
Polish the RNA-seq GSVA example
Issue addressed
For the RNA-seq GSVA example:
Closes #371 and #349. Since this is the last polishing PR to my knowledge, this also closes #406.
Remaining concerns and questions
I believe the DESeqDataSet and VST steps are up to date with the thinking in other polished notebooks, but I'm not sure I'm in the best position to comment on that.