Update `validate_dataset` to allow for experiments with duplicate samples - Githubissues

AlexsLemonade / refinebio

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

https://www.refine.bio/

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Update `validate_dataset` to allow for experiments with duplicate samples #3131

Closed arkid15r closed 1 year ago

arkid15r commented 1 year ago

Issue Number

Resolves #3055

Purpose/Implementation Notes

Change some checks to more readable versions. Use sets instead of lists for entity IDs tracking (accessions, experiments). Get rid of str + str.

Types of changes

Bugfix (non-breaking change which fixes an issue)

Functional tests

Checklist

[x] Lint and unit tests pass locally with my changes
[ ] I have added tests that prove my fix is effective or that my feature works
[ ] I have added necessary documentation (if appropriate)
[ ] Any dependent changes have been merged and published in downstream modules