Closed arkid15r closed 1 year ago
On the way to a healthy CI/CD environment all failing tests need to be fixed.
#13 27.11 Collecting MarkupSafe>=2.0 (from jinja2->rpy2==3.4.5) #13 27.25 Downloading https://files.pythonhosted.org/packages/95/7e/68018b70268fb4a2a605e2be44ab7b4dd7ce7808adae6c5ef32e34f4b55a/MarkupSafe-2.1.2.tar.gz #13 27.44 Complete output from command python setup.py egg_info: #13 27.44 Traceback (most recent call last): #13 27.44 File "<string>", line 1, in <module> #13 27.44 File "/tmp/pip-build-zu8nq2tv/MarkupSafe/setup.py", line 65, in <module> #13 27.44 run_setup(True) #13 27.44 File "/tmp/pip-build-zu8nq2tv/MarkupSafe/setup.py", line 41, in run_setup #13 27.44 setup( #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 129, in setup #13 27.44 return distutils.core.setup(**attrs) #13 27.44 File "/usr/lib/python3.8/distutils/core.py", line 121, in setup #13 27.44 dist.parse_config_files() #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 493, in parse_config_files #13 27.44 parse_configuration(self, self.command_options, #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/config.py", line 106, in parse_configuration #13 27.44 meta.parse() #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/config.py", line 382, in parse #13 27.44 section_parser_method(section_options) #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/config.py", line 355, in parse_section #13 27.44 self[name] = value #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/config.py", line 173, in __setitem__ #13 27.44 value = parser(value) #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/config.py", line 430, in _parse_version #13 27.44 version = self._parse_attr(value) #13 27.44 File "/usr/lib/python3/dist-packages/setuptools/config.py", line 305, in _parse_attr #13 27.44 module = import_module(module_name) #13 27.44 File "/usr/lib/python3.8/importlib/__init__.py", line 127, in import_module #13 27.44 return _bootstrap._gcd_import(name[level:], package, level) #13 27.44 File "<frozen importlib._bootstrap>", line 1014, in _gcd_import #13 27.44 File "<frozen importlib._bootstrap>", line 991, in _find_and_load #13 27.44 File "<frozen importlib._bootstrap>", line 973, in _find_and_load_unlocked #13 27.44 ModuleNotFoundError: No module named 'markupsafe' #13 27.44 #13 27.44 ---------------------------------------- #13 27.47 Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-zu8nq2tv/MarkupSafe/ #13 ERROR: executor failed running [/bin/bash -o pipefail -c pip3 install --ignore-installed --no-cache-dir -r requirements.txt && pip3 install --ignore-installed --no-cache-dir rpy2==3.4.5]: exit code: 1
Resolve the dependency issue.
Resolved in https://github.com/AlexsLemonade/refinebio/pull/3227
arkid15r
commented
1 year ago arkid15r
commented
1 year ago
Context
On the way to a healthy CI/CD environment all failing tests need to be fixed.
Problem or idea
Solution or next step
Resolve the dependency issue.