Update compendia dependencies

[arkid15r]

Issue Number

2751

Purpose/Implementation Notes

Update compendia Docker. Update image and R dependencies.

Types of changes

• Bugfix (non-breaking change which fixes an issue)

Checklist

• [x] Lint and unit tests pass locally with my changes
• [ ] I have added tests that prove my fix is effective or that my feature works
• [ ] I have added necessary documentation (if appropriate)
• [ ] Any dependent changes have been merged and published in downstream modules

[davidsmejia]

Do you think we should extract the compendia specific python requirements into another file and install them via pip as well?

[arkid15r]

Do you think we should extract the compendia specific python requirements into another file and install them via pip as well?

Extracted into a separate file. PTAL.