Dataset Request SRP151148

[alexslemonade-bot]

Context

A user requested SRP151148

Problem or idea

(Add description of experiment/problem here)

Solution or next step

(Add solution/next step here)

[davidsmejia]

Example failure reason:

Shell call to salmon failed because: ### salmon (mapping-based) v0.13.1 ### [ program ] => salmon ### [ command ] => quant ### [ libType ] => { A } ### [ index ] => { /home/user/data_store/TRANSCRIPTOME_INDEX/MUS_MUSCULUS/long } ### [ unmatedReads ] => { /tmp/barney } ### [ threads ] => { 16 } ### [ output ] => { /home/user/data_store/processor_job_4188476/SRR7413866_output/ } ### [ seqBias ] => { } ### [ dumpEq ] => { } ### [ writeUnmappedNames ] => { } Logs will be written to /home/user/data_store/processor_job_4188476/SRR7413866_output/logs [2019-09-03 16:35:01.741] [jointLog] [info] Fragment incompatibility prior below threshold. Incompatible fragments will be ignored. [2019-09-03 16:35:01.741] [jointLog] [warning] NOTE: It appears you are running salmon without the --validateMappings option. Mapping validation can generally improve both the sensitivity and specificity of mapping, with only a moderate increase in use of computational resources. Mapping validation is planned to become a default option (i.e. turned on by default) in the next release of salmon. Unless there is a specific reason to do this (e.g. testing on clean simulated data), --validateMappings is generally recommended. [2019-09-03 16:35:01.741] [jointLog] [info] parsing read library format [2019-09-03 16:35:01.741] [jointLog] [info] There is 1 library. [2019-09-03 16:35:01.824] [jointLog] [info] Loading Quasi index [2019-09-03 16:35:01.824] [jointLog] [info] Loading 32-bit quasi index [2019-09-03 16:35:01.824] [stderrLog] [info] Loading Suffix Array Exception : [Failed to read 915379004 bytes from input stream! Read 150994936] salmon quant was invoked improperly. For usage information, try salmon quant --help Exiting.