AlexsLemonade / refinebio

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
https://www.refine.bio/
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Fix Failed to open TCP connection for SSH error #3286

Closed arkid15r closed 9 months ago

arkid15r commented 1 year ago

Context

In order to keep staging/prod deploy process up to date the failing CI/CD tests need to be fixed.

Problem or idea

2023-05-10 18:33:34,164 local data_refinery_workers.downloaders.sra INFO [downloader_job: 8]: Final shell call of `ascp -p -Q -T -k1 -l 450m -i keys/asperaweb_id_dsa.openssh era-fasp@fasp.sra.ebi.ac.uk:/vol1/fastq/ERR036/ERR036000/ERR036000_1.fastq.gz /home/user/data_store/ERR036/ERR036000/ERR036000.fastq.gz` to ascp failed with error message: ascp: Failed to open TCP connection for SSH, exiting.
STDOUT: Session Stop  (Error: Failed to open TCP connection for SSH)
2023-05-10 18:33:34,172 local data_refinery_workers.downloaders.utils INFO [downloader_task: ] [failure_reason: stderr:
 ascp: Failed to open TCP connection for SSH, exiting.
stdout:
 Session Stop  (Error: Failed to open TCP connection for SSH)] [downloader_job: 8]: Downloader job failed!

Solution or next step

Troubleshoot and fix the issue.

arkid15r commented 9 months ago

Obsolete