AlexsLemonade / refinebio

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
https://www.refine.bio/
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Downloader jobs tests failing #3349

Closed arkid15r closed 11 months ago

arkid15r commented 1 year ago

Context

My recent local end2end tests run failed w/ the following error

Problem or idea

2023-08-08 19:29:50,065 i-0ba0fdded1568859d data_refinery_workers.downloaders.geo INFO [downloader_job: 118] [dl_file_path: /home/user/data_store/GSE94793/GSM2482973_AH01_EP1_EX_Yeast_2_.CEL.gz] [url: ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2482nnn/GSM2482973/suppl/GSM2482973_AH01_EP1_EX_Yeast_2_.CEL.gz]: Unable to extract any files.
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2023-08-08 19:29:50,079 i-0ba0fdded1568859d data_refinery_workers.downloaders.utils INFO [downloader_job: 118] [downloader_task: GEO] [failure_reason: Failed to extract any downloaded files.]: Downloader job failed!

Solution or next step

Figure out the failure reason and fix it.

arkid15r commented 11 months ago

Obsolete