Closed davidsmejia closed 10 months ago
Purpose/implementation section seems reasonable 👍🏻 -- I agree with this assessment:
My understanding is that this is to prevent different versions of salmon from being used throughout processing, which this change would still preserve.
Issue Number
N/A
Purpose/Implementation Notes
When determining if
TXImport
can be run on a particular experiment either as part of theSalmon
job or run early via the management commandrun_tximport
we verify that the latest trascriptome index is what that salmon job was run with.The problem encountered prior to this PR is that if the order of transcriptome indices is different, ie
SHORT
was created afterLONG
, this function would returnSHORT
even though we are interested in checking if the latestLONG
index matches the index used to process the quant file.My understanding is that this is to prevent different versions of salmon from being used throughout processing, which this change would still preserve.
This PR makes the following changes:
get_latest_organism_index
toget_latest_organism_indices
.Methods
n/a or see implementation notes
Types of changes
Functional tests
tested on staging
Checklist
Screenshots
n/a