We will be processing experiments as part of a request that includes some pathogens that we do not yet support. We'll need to update the config/organism_strain_mapping.csv file to include these pathogens.
Problem or idea
Add the following organisms to config/organism_strain_mapping.csv:
I will file a pull request with the updates. The strain information has been reviewed by folks with relevant expertise already, and I'll link to the assemblies in the methods section of the PR.
Context
We will be processing experiments as part of a request that includes some pathogens that we do not yet support. We'll need to update the
config/organism_strain_mapping.csvfile to include these pathogens.Problem or idea
Add the following organisms to
config/organism_strain_mapping.csv:Staphylococcus aureus Streptococcus pneumoniae Stenotrophomonas maltophilia Aspergillus fumigatus Klebsiella pneumoniae
Solution or next step
I will file a pull request with the updates. The strain information has been reviewed by folks with relevant expertise already, and I'll link to the assemblies in the methods section of the PR.