AlexsLemonade / refinebio

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

https://www.refine.bio/

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check assembly when matching on organism strain mapping #3386

Closed davidsmejia closed 9 months ago

davidsmejia commented 9 months ago

Issue Number

3381

Purpose/Implementation Notes

change logic when surveying fungi/bacteria from checking name to checking assembly
throw an error if more than one assembly matches (requires manual intervention)
took logic that fetches and searches results into a static method on transcriptome index surveyor

Methods

Explanation can be found in the issue.

Types of changes

New feature (non-breaking change which adds functionality)

Functional tests

n/a

Checklist

[x] Lint and unit tests pass locally with my changes

Screenshots

n/a

davidsmejia commented 9 months ago

closed in favor of #3397