AlexsLemonade / sc-data-integration

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Test SingleR with combining immune references #217

Closed allyhawkins closed 1 year ago

allyhawkins commented 1 year ago

As a follow up to the SingleR analysis, we should test how SingleR performs when combining into a single, harmonized reference. We should use thelabel.ont to harmonize references and follow the instructions in the SingleR book.

This should probably be done in a separate analysis notebook as we will need to re-do the model training and classification.