Closed jashapiro closed 11 months ago
In https://github.com/AlexsLemonade/scpca-docs/blob/29f445099425fc25f1556387a3bf22af80053d9d/docs/processing_information.md?plain=1#L79-L85
we state that we are using different counts for nuclei and cells, but I don't think this is what we are actually doing anymore (since https://github.com/AlexsLemonade/scpca-nf/pull/242) or so, as we are trying to match Cell Ranger 7's new behavior.
In https://github.com/AlexsLemonade/scpca-docs/blob/29f445099425fc25f1556387a3bf22af80053d9d/docs/processing_information.md?plain=1#L79-L85
we state that we are using different counts for nuclei and cells, but I don't think this is what we are actually doing anymore (since https://github.com/AlexsLemonade/scpca-nf/pull/242) or so, as we are trying to match Cell Ranger 7's new behavior.