AlexsLemonade / scpca-docs

User information about ScPCA processing
https://scpca.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Update SCE contents and processing with cell type information #166

Closed allyhawkins closed 1 year ago

allyhawkins commented 1 year ago

Closes #160

This PR makes some small adjustments to docs to sync up what we say about cell typing here to where the cell types actually live in the object.

Please let me know if you think I missed any other areas here. I will update the download section separately as part of #159 and the getting started section as part of #165.

sjspielman commented 1 year ago

@allyhawkins FYI I'm going to get to this today but realize I forgot it in my scrum!

allyhawkins commented 1 year ago

Thanks for taking a look at this @sjspielman. I incorporated your comments and then also filed https://github.com/AlexsLemonade/scpca-nf/pull/522 to return the label name. I then updated the docs here to reflect that.

sjspielman commented 1 year ago

for posterity noting that singler_reference_label metadata item referred to here matches the name used in https://github.com/AlexsLemonade/scpca-nf/pull/522 👍