Add merged objects section to getting started docs

AlexsLemonade / scpca-docs

User information about ScPCA processing

https://scpca.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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Add merged objects section to getting started docs #230

Closed sjspielman closed 9 months ago

sjspielman commented 9 months ago

Closes #216

Here, I've added some light "getting started" docs for merged objects. I provide OSCA links for DE and integration, as well as an integration benchmark paper, for more resources. I also specifically show reading objects in and subsetting to libraries of interest.

For review:

Is there additional content we should consider?
Should any of this be reorganized or differently emphasized?

sjspielman commented 9 months ago

I added some content about using metadata to subset, which necessarily includes one TODO to link in a section that hasn't been written yet. I also included a dummy example - what do you think of it?

Also, I ignored .DS_Store. I was surprised nobody had been sufficiently annoyed by that yet!

sjspielman commented 9 months ago

Added the "you may wish to cluster" bit as discussed! Let me know any more feedback on wording.