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AlexsLemonade / scpca-docs

User information about ScPCA processing
https://scpca.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Note that CellAssign could be labeled with `Not run` #249

Closed allyhawkins closed 9 months ago

allyhawkins commented 9 months ago

In https://github.com/AlexsLemonade/scpca-nf/pull/662, we accounted for processed objects that do not successfully complete CellAssign due to low numbers of cells. There, we still include the cellassign_celltype_annotation column, but we populate it with Not run. I think I noted both areas where this column is mentioned to include the Not run option.

allyhawkins commented 9 months ago

@sjspielman I like the wording you suggested for the max prediction score. I also used that same wording for any of the metadata slots related to CellAssign to indicate they are present if CellAssign was performed and completed successfully.