In case people want to use Seurat, we should include a FAQ with instructions on how to convert the object from bioconductor's SingleCellExperiment object to Seurat. I think we could follow what's in the vignette from Seurat on conversion.
Where things might get tricky is when we want to convert objects that have an AltExp. To do this, we probably want to pull out the AltExp and then build the Seurat objects. We can use the vignette on setting up Seurat with multimodal data as a guide for this.
In case people want to use Seurat, we should include a FAQ with instructions on how to convert the object from bioconductor's SingleCellExperiment object to Seurat. I think we could follow what's in the vignette from Seurat on conversion.
Where things might get tricky is when we want to convert objects that have an
AltExp. To do this, we probably want to pull out theAltExpand then build the Seurat objects. We can use the vignette on setting up Seurat with multimodal data as a guide for this.