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AlexsLemonade / scpca-docs

User information about ScPCA processing
https://scpca.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Document download structure for multiplex samples #75

Closed jaclyn-taroni closed 2 years ago

jaclyn-taroni commented 2 years ago

This is beginning to firm up. For now, I want to make sure we track adding it to the documentation!

jaclyn-taroni commented 2 years ago

@dvenprasad do you think we need another illustration for the multiplex downloads? We expect the overall folder structure to be the same, but the folder/directory names will reflect multiple samples.

dvenprasad commented 2 years ago

Yes, we do! I'll add this to my sprint

dvenprasad commented 2 years ago
multiplexed-download-folder

Does this look accurate?

jashapiro commented 2 years ago
multiplexed-download-folder

Does this look accurate?

I think so, mostly. I was not sure if the dev team was planning to change the format from commas to underscores, but if they are, that is great. Do we need three sets of libraries though, I wonder?

jashapiro commented 2 years ago

Can @arkid15r or @davidsmejia comment on whether the folder names with "sample sets" will be converted to use underscores for the downloads? I am in favor of that, in general, but I wanted to check if it is the current plan as we finalize the figure above & the docs.

davidsmejia commented 2 years ago

This looks correct to me for projects (underscores instead of commas). Should bulk be part of the multiplexed download?

jashapiro commented 2 years ago

This looks correct to me for projects (underscores instead of commas). Should bulk be part of the multiplexed download?

Thank you. Yes, bulk should still be part of multiplexed project downloads (which may contain non-multiplexed data as well!)