Please provide some background on the proposed additions or changes.
We may want to add an --overwrite option to the current GOI analysis workflow. Reasoning being, if users want to test more than one GOI list, they may want the option to overwrite or not overwrite the current GOI results files.
What are the changes that you are proposing?
There should be a check on whether or not _normalized_zscores.mtx file exists, if it does, there should be an option to overwrite it or not.
Please describe the proposed solution.
This --overwrite option and check for the _normalized_zscores.mtx should be added to the goi_calculations.R script.
The default for this option should be stored as TRUE in the GOI config file.
cbethell
commented
1 year ago
Please provide some background on the proposed additions or changes.
We may want to add an
--overwriteoption to the current GOI analysis workflow. Reasoning being, if users want to test more than one GOI list, they may want the option to overwrite or not overwrite the current GOI results files.What are the changes that you are proposing?
There should be a check on whether or not
_normalized_zscores.mtxfile exists, if it does, there should be an option to overwrite it or not.Please describe the proposed solution.
This
--overwriteoption and check for the_normalized_zscores.mtxshould be added to thegoi_calculations.Rscript. The default for this option should be stored asTRUEin the GOI config file.What potential "gotchas" do we know of?
Not that I can think of.