Closed allyhawkins closed 1 year ago
To make our AnnData output as compliable as possible with CZI, we need to update the existing row/gene metadata present in the AnnData objects to include the necessary entries. The full documentation can be found here: https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md#var-and-rawvar-gene-metadata
In brief we will need to add:
Again, we might want to consider if we should include these in the SCE objects prior to converting to AnnData so they are automatically there.
Closed by #428
To make our AnnData output as compliable as possible with CZI, we need to update the existing row/gene metadata present in the AnnData objects to include the necessary entries. The full documentation can be found here: https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/3.0.0/schema.md#var-and-rawvar-gene-metadata
In brief we will need to add:
Again, we might want to consider if we should include these in the SCE objects prior to converting to AnnData so they are automatically there.