AlexsLemonade / scpca-nf

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
BSD 3-Clause "New" or "Revised" License
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Fix bugs with generating example data #753

Closed allyhawkins closed 4 months ago

allyhawkins commented 4 months ago

When working on generating the updated example data for #748, I found a bug in main.nf where we were missing a params. call before a variable. I also realized we were missing the cellhash pools files in the example config, so it was looking for a file that doesn't exist and giving an error. I added the cellhash pool file that we have in examples to S3 and then to the profile for example. Alternatively, I could have just left it empty in the example config, but since we have the file we mine as well use it. This means that all example metadata files should now also be on S3.