This PR adds the new scpcaTools containers which upgrade everything to R 4.4.0 and Bioconductor 3.19. I tried to use the slimmest container I could find for each task, and I think I got them all correct, but a bit more testing will be required to be sure that all code paths are tests (which is what #761 is for!)
Before merging these into main we will need to cut a release of scpcaTools to fix the docker versions, which are currently set to edge.
Closes #760
This PR adds the new scpcaTools containers which upgrade everything to R 4.4.0 and Bioconductor 3.19. I tried to use the slimmest container I could find for each task, and I think I got them all correct, but a bit more testing will be required to be sure that all code paths are tests (which is what #761 is for!)
Before merging these into
mainwe will need to cut a release of scpcaTools to fix the docker versions, which are currently set toedge.