scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
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Output bulk data to a `bulk` folder rather than individual files within project directory #766
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allyhawkins closed 4 months ago
Rather than output the bulk data and metadata as individual files within the project directory, we want to output these files to a
bulk
folder. This means updating thepublishDir
statement to be"${params.results_dir}/${meta.project_id}/bulk"
in the line below: https://github.com/AlexsLemonade/scpca-nf/blob/a9dc826b8576c48ca38c6ca137f9eeced29c3acc/modules/bulk-salmon.nf#L71.