Move bulk output to separate bulk directory

AlexsLemonade / scpca-nf

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

BSD 3-Clause "New" or "Revised" License

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Move bulk output to separate bulk directory #767

Closed allyhawkins closed 4 months ago

allyhawkins commented 4 months ago

Closes #766 Closes #764

Here I just added a bulk directory to the existing publishDir for the bulk output. This will mean both the quant and metadata files will be saved to project_id/bulk.

While I was here I decided to update the order of the bulk metadata to match the project metadata and single_cell_metadata.tsv files that are on the Portal.