We have not been successful in completing the merged workflow when there are > 100 libraries being merged into a single object. Because of this we probably want to add a check for the total number of libraries being merged and if it's > 100 we skip creating the object and emit a warning message about how that object won't be created, similar to what we do for multiplexed samples.
allyhawkins
commented
2 months ago
We have not been successful in completing the merged workflow when there are > 100 libraries being merged into a single object. Because of this we probably want to add a check for the total number of libraries being merged and if it's > 100 we skip creating the object and emit a warning message about how that object won't be created, similar to what we do for multiplexed samples.
Something similar to this but for total number of libraries: https://github.com/AlexsLemonade/scpca-nf/blob/f215046b3a9d9ddc50fac1a198a57e1bb813aeae/merge.nf#L175-L179