This PR adds in an example of the UMAPs that we are including for merged UMAPs. I know that we haven't actually produced any final merged objects, but we still plan to show these UMAPs. I used one of the projects that we've been testing with and only am showing 4 libraries, which I think is plenty.
I updated the script to sync data files to include syncing the merged object for this project. Note that right now this is using the object that lives in s3://nextflow-ccdl-results/scpca/processed rather than scpca-prod, but I think that's okay. If we wanted to use the prod version, we would just need to switch the directory that's listed in the script.
In the script to create the UMAPs I picked 4 libraries that we want to show and am filtering to those 4 libraries only before plotting. This should control for any future changes in the merged object if we were to include more libraries or use the prod version with all libraries.
As with a lot of the other plots, I took most of the code for the plot itself from the merged report template in scpca-nf.
Tagging @jaclyn-taroni for any aesthetic comments and requesting @sjspielman for review.
Closes #9
This PR adds in an example of the UMAPs that we are including for merged UMAPs. I know that we haven't actually produced any final merged objects, but we still plan to show these UMAPs. I used one of the projects that we've been testing with and only am showing 4 libraries, which I think is plenty.
s3://nextflow-ccdl-results/scpca/processedrather thanscpca-prod, but I think that's okay. If we wanted to use the prod version, we would just need to switch the directory that's listed in the script.scpca-nf.Tagging @jaclyn-taroni for any aesthetic comments and requesting @sjspielman for review.