Here I'm adding in the compiled pdf/png versions of the celldex and cellassign figures. These will now appear earlier in the text than what was S4 and S5, so part of this PR is switching the names.
Fig S4 should have the celldex comparison
Fig S5 should have the CellAssign example where A is the UMAPs and B is the heatmap comparing to submitter annotations
Fig S6 is the diagnostic plots
Fig S7 is the heatmap showing submitter annotations vs. SingleR and CellAssign
One note is that I previously was saving the panel for the celldex comparisons to a png file, but it was going to be really hard to edit any fonts there, which was going to bother me if that was the only figure not in Arial. So, I updated this to export to a pdf and then edited the fonts before saving to figure_s4.png and figure_s5.pdf. I think the overall file size is still okay, even though its a lot of points.
I also updated the alpha to try and make a little bit more contrast between the open and closed points, and I think this looks a tiny bit better.
Closes #81
Here I'm adding in the compiled pdf/png versions of the celldex and cellassign figures. These will now appear earlier in the text than what was S4 and S5, so part of this PR is switching the names.
One note is that I previously was saving the panel for the celldex comparisons to a png file, but it was going to be really hard to edit any fonts there, which was going to bother me if that was the only figure not in Arial. So, I updated this to export to a pdf and then edited the fonts before saving to
figure_s4.pngandfigure_s5.pdf. I think the overall file size is still okay, even though its a lot of points.I also updated the
alphato try and make a little bit more contrast between the open and closed points, and I think this looks a tiny bit better.