Right now we are showing HTO FASTQ as input to demultiplexing, but not as input to alevin-fry. This isn't entirely accurate, so we should adjust this to show that both the RNA and HTO FASTQ are used as input to alevin-fry. We might also want to show the HTO by cell counts matrix as we do with ADT.
Right now we are showing HTO FASTQ as input to demultiplexing, but not as input to alevin-fry. This isn't entirely accurate, so we should adjust this to show that both the RNA and HTO FASTQ are used as input to alevin-fry. We might also want to show the HTO by cell counts matrix as we do with ADT.