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AlexsLemonade / scpcaTools

BSD 3-Clause "New" or "Revised" License
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Update renv & python #242

Closed jashapiro closed 11 months ago

jashapiro commented 11 months ago

Since I was already messing around with versions, I thought I would see what happened if I tried updating more packages. I don't think we should put this in as part of 0.3.1, because it needs more QC to be sure, but maybe we could see.

Note that I did not update Bioconductor as part of this PR, only packages within Bioconductor 3.17 and from CRAN

The main advantage of the updating, by the way, is that a lot of annoying warnings are removed due to changes in how sparse matrices are stored. I also close a few of dependabot's security warnings with python packages.

jashapiro commented 11 months ago

I guess we should try it? @allyhawkins