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AlexsLemonade / scpcaTools

BSD 3-Clause "New" or "Revised" License
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Update to R 4.4 & renv 3.19 #273

Closed jashapiro closed 7 months ago

jashapiro commented 7 months ago

This PR updates scpcaTools development environment and docker to use R 4.4 and Bioconductor 3.19.

When running checks, I found a couple of missing escape characters in documentation, so I added those as well. All checks passed locally, so hopefully there are not any breaking changes!

closes #272

jashapiro commented 7 months ago

Looks like I forgot to update the sub-lockfiles, which is probably why the 1st docker build attempt failed.

When testing this though, I wanted to try building straight from the scpcaTools version in the PR, rather than what gets pulled from github, so I moved the dockerfile up a level, and rearranged a few things to make sure everything kept working as expected.