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AlexsLemonade / training-modules

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
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link-data.sh should reflect all indices included in resources for consultation sessions #426

Closed jaclyn-taroni closed 3 years ago

jaclyn-taroni commented 3 years ago

Related to AlexsLemonade/2021-march-training#17 - linking from that branch: https://github.com/AlexsLemonade/2021-march-training/blob/89854602f37a8354e8f9059f2f09854ce3a2f0f9/workshop/resources-for-consultation-sessions.md#transcriptome-indices-for-non-human-organisms

We list a bunch of files for non-human organisms and at the moment we only link:

So we're missing the long indices. Because we now cover tximeta, we don't need the tx2gene files for other organisms (for bulk RNA-seq, anyway). This is to say: we need the short and long indices for human, mouse, zebrafish, and dog.

jaclyn-taroni commented 3 years ago

I got ahead of myself here. We use ~/shared-data in that documentation, not index/<organism> so this is unecessary!