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AlexsLemonade / training-modules

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.
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Check training materials for Bioc3.19 compatibility #759

Open jashapiro opened 2 months ago

jashapiro commented 2 months ago

Following #758, we should go through all materials here and in the exercises to make sure that all of the results are still as expected and build without errors.

sjspielman commented 1 month ago

I have checked all of the scRNA-seq (and intro-to-R-tidyverse; no BioC so just checked for build) instruction notebooks, and everything is consistent! Next, I will check the scRNA-seq exercise notebooks.

sjspielman commented 1 month ago

scRNA-seq exercises look good as well!

This issue is all set for material we teach in the intro single-cell workshop, but we still will want to eventually check the advanced single-cell (maybe also bulk..?) materials.