Demonstrate whole-workflow parsing

[lukem12345]

Currently, Decapodes documentation demonstrates how to read and write Decapode ACSets to and from JSON files. However, there are no docs demonstrating how to also store the composition pattern UWD as JSON, nor the IC and BC morphisms.

Now that Catlab PR #865 supports the serialization of ACSetTransformations, we have everything that we need to load in a complete simulation:

• Serialized component Decapode ACSets. e.g.
• Serialization composition pattern UWD ACSet
• Serialized IC and BC morphism ACSetTransformations . e.g.
• Serialized mesh
  • From a generator script. e.g.
  • From a .OBJ file. e.g.
  • From a DeltaSet ACSet e.g.
• Initial and Boundary condition data as a .HDF5 file
  • From a TIF e.g.
• Writing the generated simulation to a file e.g.

These serialization techniques should be collated into a single docs page.

[jpfairbanks]

The serialization of the UWDs can also be done with SyntacticModels in a more expression tree way

[jpfairbanks]

https://github.com/AlgebraicJulia/SyntacticModels.jl/blob/main/src/composite_models.jl