Error in splicing variants wrt the reference full-length transcript

AlgoLab / PIntron

A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

http://www.algolab.eu/PIntron

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Error in splicing variants wrt the reference full-length transcript #21

Open rrizzi opened 12 years ago

rrizzi commented 12 years ago

In the CDS annotation program (CCDS.c) the detection of the splicing variants wrt the reference full-length is not compatible to the gene strand when the strand is negative. Check this bug referring to gene MTCP1 (job 182, list 4498).

PIntron version: v1.2.35