Problem in determining the full-length reference

AlgoLab / PIntron

A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence

http://www.algolab.eu/PIntron

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Problem in determining the full-length reference #30

Closed rrizzi closed 12 years ago

rrizzi commented 12 years ago

PIntron terminates with the following error during the maximal transcript reconstruction step in the analysis of gene TBCC:

CDS for RefSeq obtained from ./cds!
ERROR: CCDS not set 2!

PIntron version: v1.2.45 Input files: https://gist.github.com/gists/3782036/download

yp commented 12 years ago

This is likely due to the fact that the reference full-length is not the input RefSeq but an assembled transcript composed of two exons with no ORF (CDS).